Chipbase 2.0
WebJul 17, 2024 · The CHIPS Alliance announced it released the Advanced Interface Bus (AIB) version 2.0 draft specification on GitHub. AIB standard is an open-source, royalty-free … WebSep 7, 2024 · ChIPBase constructed ‘Regulator’ module to predict hundreds of TFs and histone modifications that were involved in or affected transcription of ncRNAs and PCGs. ChIPBase built a web-based tool, Co-Expression, to recognize the co-expression patterns between DNA-binding proteins and various types of genes by integrating the gene …
Chipbase 2.0
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WebJan 4, 2024 · ChIPBase v2.0 consists of nine web-based modules and tools. The LncRNA, miRNA, OtherNcRNA, Protein and Regualtor modules are mainly developed to … WebDownload Table The library statistics of ChIP-seq datasets in ChIPBase v2.0 from publication: ChIPBase v2.0: Decoding transcriptional regulatory networks of non-coding RNAs and protein-coding ...
WebNational Center for Biotechnology Information http://www.rnanut.net/lncrnadisease/index.php/home/search
WebNov 4, 2013 · ChIPBase: a database for decoding the transcriptional regulation of long non-coding RNA and microRNA genes from ChIP-Seq data. Nucleic Acids Res. 2013; 41:D177–D187. [Europe PMC free article] [Google Scholar] 16. Liu X, Wang S, Meng F, Wang J, Zhang Y, Dai E, Yu X, Li X, Jiang W. SM2miR: a database of the experimentally … WebChIPBase v2.0 is an open database for studying the transcription factor binding sites and motifs, and decoding the transcriptional regulatory networks of lncRNAs, miRNAs, other …
WebNov 18, 2024 · ChIPBase has identified ∼151 187 000 regulatory relationships between ∼171 600 genes and ∼3000 regulators by analyzing ∼55 000 ChIP-seq datasets, which …
WebMar 17, 2024 · A rapamycin analog containing an alkyne group (alk-rapa) was synthesized by a one-step reaction between rapamycin and 3-(but-3-yn-1-yl)-3-(2-iodoethyl)-3H-diazirine at room temperature overnight (Figures 1 A and S1 A).The azide-rhodamine or azide-biotin was reacted with alk-rapa by a copper-catalyzed azide-alkyne cycloaddition (CuAAC) … shop haufehttp://deepbase.sysu.edu.cn/chipbase/expression.php shop haverlyWebAn ensemble model of binary node interactions (valid for an abstract average cell) was derived from publicly available data. Transcription factor binding data was derived from ChIPBase 2.0 (Zhou et al., 2024), and … shop haute closetWebSep 1, 2024 · ChIPBase has identified ∼151 187 000 regulatory relationships between ∼171 600 genes and ∼3000 regulators by analyzing ∼55 000 ChIP-seq datasets, which … shop hastingsWebThis page allows you to search LncRNA-Disease or CircRNA-Disease Associations of interest by the keywords. For Keyword Search, you may use different types of keyword as input for database searching, the LncRNA Symbol for instance, you can use Official gene symbol (e.g. ' H19 ') etc. For Advanced Filter, you can use different combinations of the ... shop havellandWebChIPBase v3.0 identified ~151,187,000 regulatory relationships between ~171,600 genes and ~3,000 regulators by analyzing ~55,000 ChIP-seq datasets, which represent a 30 … shop hats leftist progressiveWebNews: ChIPBase v2.0 has been updated to v3.0 ! Jumping to ChIPBase v3.0 page to see more function and modules. How to cite: ChIPBase v2.0: decoding transcriptional … News: ChIPBase v2.0 has been updated to v3.0 ! Jumping to ChIPBase v3.0 page … LncRNA module allows users to browse genes that could be upstream or … miRNA module allows users to browse genes that could be upstream or … OtherNcRNA module allows users to browse genes that could be upstream or … Protein module allows users to browse genes that could be upstream or … Regulator module provides users with an interface to search for the DNA-binding … Motif provides users with a platform to visulize the binding motifs of … ChIP-Function tool help users predict the functions of DNA-binding proteins by … ChIP-seq allows users to download or browse the binding sites of the DNA … shop havells.com